CoE Publications 2014

Allahverdiyeva Y, Aro EM and Kosourov SN (2014)  Recent developments on cyanobacteria and green algae for biohydrogen photoproduction and its importance in CO2 reduction. In: Gupta V, Tuohy M, Kubicek C, Saddler J and Xu F (eds.) Bioenergy Research: Advances and Applications, 1st Edition. Elsevier, ISBN 978-0-444-59561-4 367-387 http://dx.doi.org/10.1016/B978-0-444-59561-4.00021-8

Antal TK, Matorin DN, Kukarshkikh GP, Lambreva MD, Tyystjärvi E, Krendeleva TE, Tsygankov AA and Rubin AB (2014) Pathways of hydrogen photoproduction by immobilized Chlamydomonas reinhardtii cells deprived of sulfur. INTERNATIONAL JOURNAL OF HYDROGEN ENERGY 39: 18194-18203 http://dx.doi.org/10.1016/j.ijhydene.2014.08.135

Battchikova N and Aro E-M (2014) Proteomics in revealing the composition, acclimation and biogenesis of thylakoid membranes. In: Flores, E. and Herrero A. (eds.) The Cell Biology of Cyanobacteria. Caister Academic press, Norfolk, UK. ISBN: 978-1-908230-38-6. Chapter 4, pp. 89-120

Bersanini L, Battchikova N, Jokel M, Rehman A, Vass I, Allahverdiyeva Y and Aro EM (2014) Flv2/Flv4 related photoprotective mechanism dissipates excitation pressure of photosystem II in co-operation with phycobilisomes in cyanobacteria. PLANT PHYSIOLOGY 164: 805-818. http:/​/​dx.​doi.​org/​10.​1104/​pp.​113.​231969  open access

Cai Z, Liu J, Wang H, Yang C, Chen Y, Li Y, Pan S, Dong R, Tang G, Barajas-Lopez JdeD, Fujii H and Wang X. (2014) GSK3-like kinases positively modulate abscisic acid signaling through phosphorylating subgroup III SnRK2s in Arabidopsis. PROC NATL ACAD SCI USA 111:9651-9656 http://dx.doi.org/10.1073/pnas.1316717111

Dang KV, Plet J, Tolleter D, Jokel M, Cuiné S, Carrier P, Auroy P, Richaud P, Johnson X, Alric J, Allahverdiyeva Y and Peltier G (2014) Combined increases in mitochondrial cooperation and oxygen photoreduction compensate for deficiency in cyclic electron flow in Chlamydomonas reinhardtii. THE PLANT CELL 26: 3036-3050. http://dx.doi.org/10.1105/tpc.114.126375 open access

Dettmer J, Ursache R, Campilho A, Miyashima S, Belevich I, O'Regan S, Mullendore DL, Yadav SR, Lanz C, Beverina L, Papagni A, Schneeberger K, Weigel D, Stierhof YD, Moritz T, Knoblauch M, Jokitalo E and Helariutta Y (2014) CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. NATURE COMMUNICATIONS 5:4276 http://dx.doi.org/10.1038/ncomms5276

Ermakova M, Battchikova N, Richaud P, Leino H, Kosourov S, Isojärvi J, Peltier G, Flores E, Cournac L, Allahverdiyeva Y, Aro EM (2014) Heterocyst-specific flavodiiron protein Flv3B enables oxic diazotrophic growth of the filamentous cyanobacterium Anabaena sp. PCC 7120. PROC NATL ACAD SCI USA 111:11205-11210. http://dx.doi.org/10.1073/pnas.1407327111  open access

Ferroni L, Angeleri M, Pantaleoni L, Pagliano C, Longoni P, Marsano F, Aro EM, Suorsa M, Baldisserotto C, Giovanardi M, Cella R and Pancaldi S (2014)  Light-dependent reversible phosphorylation of the minor photosystem II antenna Lhcb6 (CP24) occurs in lycophytes. THE PLANT JOURNAL 77(6): 893-905. http://dx.doi.org/10.1111/tpj.12437

Furuta KM, Hellmann E and Helariutta Y (2014) Molecular control of cell specification and cell differentiation during procambial development. ANNU REV PLANT BIOL 65:607-638. http://dx.doi.org/10.1146/annurev-arplant-050213-040306

Furuta KM, Yadav SR, Lehesranta S, Belevich I, Miyashima S, Heo JO, Vatén A, Lindgren O, De Rybel B, Van Isterdael G, Somervuo P, Lichtenberger R, Rocha R, Thitamadee S, Tähtiharju S, Auvinen P, Beeckman T, Jokitalo E and Helariutta Y (2014) Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation. SCIENCE 345:933-7. http://dx.doi.org/10.1126/science.1253736  open access

Gunnelius l, Hakkila K, Kurkela J, Wada H, Tyystjärvi E and Tyystjärvi T (2014) The omega subunit of the RNA polymerase core directs transcription efficiency in cyanobacteria. NUCLEIC ACIDS RESEARCH 42: 4606-4614 http://dx.doi.org/10.1093/nar/gku084  open access

Hakkila K, Antal T, Rehman AU, Kurkela J, Wada H, Vass I, Tyystjärvi E and Tyystjärvi T (2014) Oxidative stress and photoinhibition can be separated in the cyanobacterium Synechocystis sp. PCC 6803. BIOCHIMICA ET BIOPHYSICA ACTA – BIOENERGETIS 1837: 217-225 http://dx.doi.org/10.1016/j.bbabio.2013.11.011

Idänheimo N, Gauthier A, Salojärvi J, Siligato R, Brosché M, Kollist H, Mähönen AP, Kangasjärvi J and Wrzaczek M (2014) The Arabidopsis thaliana cysteine-rich receptor-like kinases CRK6 and CRK7 protect against apoplastic oxidative stress. BIOCHEM BIOPHYS RES COMMUN 445:457-462 http://dx.doi.org/10.1016/j.bbrc.2014.02.013

Kangasjärvi S and Kangasjärvi J (2014) Towards understanding extracellular ROS sensory and signaling systems in plants. ADVANCES IN BOTANY Article ID 538946 http://dx.doi.org/10.1155/2014/538946 open access

Karonen M, Mattila H, Huang P, Mamedov F, Styring S and Tyystjärvi E (2014) A tandem mass spectrometric method for singlet oxygen measurement. PHOTOCHEMISITRY AND PHOTBIOLOGY 90:965-971 http://dx.doi.org/10.1111/php.12291

Kosourov S, Leino H, Murukesan G, Lynch F, Sivonen K, Tsygankov AA, Aro EM and Allahverdiyeva Y (2014) Hydrogen photoproduction by immobilized N2-fixing cyanobacteria: understanding the role of the uptake hydrogenase in the long-term process. APPL. ENVIRON. MICROB 80:5807-5817 http://dx.doi.org/10.1128/AEM.01776-14  open access

Lehtimäki N, Koskela M, Dahström K, Pakula E, Lintala M, Scholz M, Hippler M, Hanke G, Rokka A, Battchikova N, Salminen T and Mulo P (2014) Post-translational modifications of ferredoxin-NADP+ oxidoreductase in Arabidopsis thaliana chloroplasts. PLANT PHYSIOLOGY 166:1764-1776 http://dx.doi.org/10.1104/pp.114.249094  open access

Liebsch D, Sunaryo W, Holmlund M, Norberg M, Zhang J, Hall HC, Helizon H, Jin X, Helariutta Y, Nilsson O, Polle A and Fischer U (2014) Class I KNOX transcription factors promote differentiation of cambial derivatives into xylem fibers in the Arabidopsis hypocotyl. DEVELOPMENT 141:4311-9 http://dx.doi.org/10.1242/dev.111369 open access

Lintala M, Schuck N, Thormählen I, Jungfer A, Weber KL, Weber APM, Geigenberger P, Soll J, Bölter B, Mulo P (2014) Arabidopsis tic62 trol mutant lacking thylakoid bound ferredoxin-NADP+ oxidoreductase shows distinct metabolic phenotype. MOLECULAR PLANT 7:45-57. http://dx.doi.org/10.1093/mp/sst129 open access

Mähönen AP, ten Tusscher K, Siligato R, Smetana O, Díaz-Triviño S, Salojärvi J, Wachsman G, Prasad K, Heidstra R and Scheres B (2014) PLETHORA gradient formation mechanism separates auxin responses. NATURE 515: 125-129. http://dx.doi.org/10.1038/nature13663  open access

Mustila H, Allahverdiyeva Y, Isojärvi J, Aro EM and Eisenhut M (2014) The bacterial-type [4Fe-4S] ferredoxin 7 has a regulatory function under photooxidative stress conditions in the cyanobacterium Synechocystis sp. PCC 6803. BIOCHIM. BIOPHYS ACTA -  BIOENERGETICS 1837:1293-1304. http://dx.doi.org/10.1016/j.bbabio.2014.04.006

Pietrzykowska M, Suorsa M, Semchonok DA, Tikkanen M, Boekema EJ, Aro EM and Jansson S (2014) The light-harvesting chlorophyll a/b binding proteins Lhcb1 and Lhcb2 play complementary roles during state transitions in Arabidopsis. THE PLANT CELL 26(9):3646-3660. http://dx.doi.org/10.1105/tpc.114.127373

Porcar-Castell A, Tyystjärvi E, Atherton J, Van der Tol C, Flexas J, Pfündel EE, Moreno J, Frankenberg C and Berry JA (2014) Linking chlorophyll-a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges. JOURNAL OF EXPERIMENTAL BOTANY 65:4065-4095 http://dx.doi.org/10.1093/jxb/eru191

Rasool B, Karpinska B, Konert G, Durian G, Denessiouk K, Kangasjärvi S, Foyer CH (2014) Effects of light and the regulatory B-subunit composition of protein phosphatase 2A on the susceptibility of Arabidopsis thaliana to aphid (Myzus persicae) infestation. FRONTIERS IN PLANT SCIENCE 5:405. http://dx.doi.org/10.3389/fpls.2014.00405  open access

Suorsa M, Rantala M, Danielsson R, Järvi S, Paakkarinen V, Schröder WP, Styring S, Mamedov F and Aro EM (2014) Dark-adapted spinach thylakoid protein heterogeneity offers insights into the Photosystem II repair cycle. - BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1837(9):1463-1471 http://dx.doi.org/10.1016/j.bbabio.2013.11.014

Tikkanen M and Aro EM (2014) Integrative regulatory network of plant thylakoid energy transduction. TRENDS IN PLANT SCENCE 19:10-17  http://dx.doi.org/10.1016/j.tplants.2013.09.003

Tikkanen M, Gollan PJ, Mekala NR, Isojärvi J and Aro EM (2014) Light-harvesting mutants show differential gene expression upon shift to high light as a consequence of photosynthetic redox and reactive oxygen species metabolism. - PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B 369(1640):20130229 http://dx.doi.org/10.1098/rstb.2013.0229

Tikkanen M, Mekala NR and Aro EM (2014) Photosystem II photoinhibition-repair cycle protects Photosystem I from irreversible damage. BIOCHIMICA ET BIOPHYSICA ACTA (BBA) - BIOENERGETICS 1837(1):210-215 http://dx.doi.org/10.1016/j.bbabio.2013.10.001

Ursache R, Miyashima S, Chen Q, Vatén A, Nakajima K, Carlsbecker A, Zhao Y, Helariutta Y and Dettmer J (2014) Tryptophan-dependent auxin biosynthesis is required for HD-ZIP III-mediated xylem patterning. DEVELOPMENT 141:1250-1259 http://dx.doi.org/10.1242/dev.103473  open access

aahtera L, Brosché M, Wrzaczek M and Kangasjärvi J (2014) Specificity in ROS signaling and transcript signatures. Invited review, ANTIOXIDANTS & REDOX SIGNALING 21:1422-1441 http://dx.doi.org/10.1089/ars.2013.5662